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Publications

2020


88. Alfonso FS, Zhou Y, Liu E, McGuire AF, Yang Y, Kantarci H, Li D, Copenhaver E, Zuchero JB, Müller H, Cui B.
Label-free optical detection of bioelectric potentials using electrochromic thin films
PNAS (2020). [Link]

87. Li TL, Cui B.
Production and Isolation of Magnetic Protein Crystals in HEK293T Cells
Bio Protoc (2020). [Link]

86. Huang P, Liu A, Song Y, Hope JM, Cui B, Duan L.
Optical Activation of TrkB Signaling
J Mol Bio (2020). [Link]

85. Hope JM, Liu A, Calvin GJ, Cui B.
Construction of Light-Activated Neurotrophin Receptors Using the Improved Light-Induced Dimerizer (iLID)
J Mol Bio (2020). [Link]

84. Jones IV T, Liu A, Cui B.
Light-Inducible Generation of Membrane Curvature in Live Cells with Engineered BAR Domain Proteins
ACS Syn Bio (2020). [Link]

83. De Martino S, Zhang W, Klausen L, Lou HY, Li X, Alfonso FA, Cavalli S, Netti PA, Santoro F, Cui B.
Dynamic Manipulation of Cell Membrane Curvature by Light-Driven Reshaping of Azopolymer
Nano Lett. (2020). [Link]

2019


82. Lou HY, Zhao W, Li X, Duan L, Powers A, Akamatsu M, Santoro F, McGuire AF, Cui Y, Drubin DG, Cui B.
Membrane curvature underlies actin reorganization in response to nanoscale surface topography
Proc. Natl. Acad. Sci. USA (2019). [Link]

81. Li TL, Wang Z, You H, Ong Q, Varanasi VJ, Dong M, Lu B, Paşca SP, Cui B.
Engineering a Genetically Encoded Magnetic Protein Crystal
Nano Lett. (2019). [Link]

80. Li X, Matino L, Zhang W, Klausen L, McGuire AF, Lubrano C, Zhao W, Santoro F, Cui B,
A nanostructure platform for live-cell manipulation of membrane curvature
Nat. Prot. (2019). [Link]

79. Iandolo D, Pennacchio FA, Mollo V, Rossi D, Dannhauser D, Cui B, Owens RM, Santoro F,
Electron Microscopy for 3D Scaffolds–Cell Biointerface Characterization
Adv. Biosys. (2019). [Link]

2018


78. Liu Y‡, McGuire AF‡, Lou HY, Li TL, Tok JB, Cui B, Bao Z,
Soft Conductive Micropillar Electrode Arrays for Biologically-relevant Electrophysiological Recording
Proc. Natl. Acad. Sci. USA (2018). [Link]

77. Dipalo M‡, McGuire AF‡, Lou HY, Caprettini V, Melle G, Bruno G, Lubrano C, Matino L, Li X, De Angelis F, Cui B, Santoro F,
Cells Adhering to 3D Vertical Nanostructures: Cell Membrane Reshaping without Stable Internalization
ACS Nano (2018). [Link]

76. Duan L‡, Hope JM‡, Guo S‡ Ong Q, François A, Kaplan L, Scherrer G, Cui B,
Optical Activation of TrkA Signaling
ACS Synthetic biology (2018). [Link]

75. Chowdary PD, Kaplan L, Che DL, Cui B,
Dynamic Clustering of Dyneins on Axonal Endosomes: Evidence from High-Speed Darkfield Imaging
Biophysical Journal (2018). [Link]

74. Cui L, Song J, McGuire AF, Kang S, Fang X Wang J, Yin C, Li X, Wang Y, Cui B,
Constructing Highly Uniform Onion-Ring-like Graphitic Carbon Nitride for Efficient Visible-Light-Driven Photocatalytic Hydrogen Evolution
ACS Nano (2018). [Link]

73. Lou HY, Zhao W, Zeng Y, Cui B,
The Role of Membrane Curvature in Nanoscale Topography-Induced Intracellular Signaling
Accounts of Chemical Research (2018). [Link]

72. McGuire AF, Santoro F, Cui B,
Interfacing Cells with Vertical Nanoscale Devices: Applications and Characterization
Annual Review of Analytical Chemistry (2018). [Link]

71. Kaplan L, Ierokomos A, Chowdary P, Bryant Z, Cui B,
Rotation of endosomes demonstrates coordination of molecular motors during axonal transport
Science Advances (2018). [Link]

70. Sung K, Ferrari LF, Yang W, Chung C, Zhao X, Gu Y, Lin S, Zhang K, Cui B, Pearn ML, Maloney MT, Mobley WC, Levine JD, Wu C,
Swedish Nerve Growth Factor Mutation (NGFR100W) Defines a Role for TrkA and p75NTR in Nociception
Journal of Neuroscience (2018). [Link]

2017


69. Santoro F, van de Burgt Y, Keene ST, Cui B, Salleo A,
Enhanced Cell-Chip Coupling by Rapid Femtosecond Laser Patterning of Soft PEDOT:PSS Biointerfaces
ACS Applied Material Interfaces (2017). [Link]

68. Zhang Z, Xu R, Wang Z, Dong M, Cui B, Chen M,
Visible-Light Neural Stimulation on Graphitic-Carbon Nitride/Graphene Photocatalytic Fibers
ACS Applied Material Interfaces (2017). [Link]

67. Duan L, Hope J, Ong Q, Lou HY, Kim N, McCarthy C, Acero V, Lin MZ, Cui B,
Understanding CRY2 interactions for optical control of intracellular signaling
Nature Communications (2017). [Link]

66. Santoro F, Zhao W, Joubert LM, Duan L, Schnitker J, van de Burgt Y, Lou HY, Liu B, Salleo A, Cui L, Cui Y, Cui B,
Revealing The Cell-Material Interface With Nanometer Resolution By Focused Ion Beam/Scanning Electron Microscopy
ACS Nano (2017). [Link]

65. Zhao W, Hanson L, Lou HY, Akamatsu M, Chowdary PD, Santoro F, Marks JR, Grassart A, Drubin DG, Cui Y, Cui B,
Nanoscale manipulation of membrane curvature for probing endocytosis in live cells
Nature Nanotechnology (2017). [Link]

64. Lin ZC, McGuire AF, Burridge PW, Matsa E, Lou HY, Wu JC, Cui B,
Accurate nanoelectrode recording of human pluripotent stem cell-derived cardiomyocytes for assaying drugs and modeling disease, 
Microsystems & Nanoengineering, 3, 16080 (2017). [Link]

63. Lou HY, Zhao W, Hanson L, Zeng C, Cui Y, Cui B,
Dual-Functional Lipid Coating for the Nanopillar-Based Capture of Circulating Tumor Cells with High Purity and Efficiency,
Langmuir, 33: 4, 1097-1104 (2017) [Link]

62. Guo S, Palanski BA, Kloech C, Khosla C, Cui B,
Intracellular TG2 activity increases microtubule stability but is not sufficient to promot neurite growth, 
Neuroscience Bulletin33: 103 (2017). [Link]

61. Jia JM, Chowdary PD, Gao XF, Ci B, Li W, Mulgaonkar A, Plautz EJ, Hassan G, Kumar A, Stowe AM, Yang SH, Zhou W, Sun X, Cui B, Ge WP,
Control of cerebral ischemia with magnetic nanoparticles,
Nature Methods, 14, 160–166 (2017). [Link]

2016


60. Horng J‡, Balch H‡, McGuire AF, Tsai HZ, Forrester P, Crommie M, Cui B, Wang F,
Imaging electric field dynamics with graphene optoelectronics,
Nature Communications, 7, 13704 (2016). [Link]

59. Ong Q, Guo S, Duan L, Zhang K, Collier EA, Cui B,
The timings of Raf/ERK and AKT activation in protecting PC12 cells against oxidative stress,
PLOS ONE, 11, e0153487, (2016). [Link]

58. Che DL, Chowdary PD, Cui B,
A close look at axonal transport: cargos slow down when crossing stationary organelles,
Neuroscience Letters, 610, 110-116, (2016). [Link]

2015


57. Chowdary PD, Che DL, Kaplan L, Chen O, Pu K, Bawendi M, Cui B,
Nanoparticle-assisted optical tethering of endosomes reveals the coorperative function of dyneins in retrograde axonal transport,
Scientific Reports, 5, 18059, (2015). [Link]

56. Tee BC, Chortos A, Berndt A, Nguyen AK, Tom A, McGuire AF, Lin ZC, Tien K, Bae WG, Wang H, Mei P, Chou HH, Cui B, Deisseroth K, Ng TN, Bao Z,
A skin-inspired organic digital mechanoreceptor,
Science, 350, 313-316 (2015). [Link]

55. Wong YH, Lee CM, Xie W, Cui B, Poo MM,
Activity-dependent BNDF release via endocytic pathways is regulatred by synaptotagmin-6 and complexin,
Proc. Natl. Acad. Sci. USA, doi: 10.1073/pnas.1511830112 (2015). [Link]

54. Che DL‡, Duan L‡, Zhang K, Cui B,
The dual characteristics of light-induced cryptochrome 2 homo-oligomerization and hetero-dimerization for optogenetic manipulation in mammalian cells,
ACS Synthetic Biology , DOI: 10.1021/acssynbio.5b00048, (2015). [Link]

53. Chowdary PD, Che DL, Zhang K, Cui B,
Retrograde NGF axonal transport - coordination of opposite polarity motors near unidirectional motility regime,
Biophysical Journal, 108, 2691-2703, (2015). [Link]

52. Hanson L, Zhao W, Lou HY, Lin ZL, Lee SW, Chowdary PD, Cui Y, Cui B,
Vertical nanopillars for in situ probing of nuclear mechanics in adherent cells,
Nature Nanotechnology, 10, 554-562 (2015). [Link]

51. Duan L‡, Che DL‡, Zhang K, Ong Q, Guo S, Cui B,
Optogenetic control of molecular motors and organelle distributions in cells,
Chemistry & Biology, 22, 671-682 (2015). [Link]

50. Volotskova O, Sun C, Stafford JH, Koh AL, Ma X, Cheng Z, Cui B, Pratx G, Xing L,
Efficient radioisotope energy transfer (RET) by gold nanoclusters for molecular imaging,
Small, DOI: 10.1002/smll.201500907, (2015). [Link]

49. Angle MR, Cui B, Melosh NA,
Nanotechnology and neurophysiology,
Current Opinion on Neurobiology, 32, 132-140 (2015). [Link]

48. Zhang K, Chowdary PD, Cui B,
Visualizing directional Rab7 and TrkA cotrafficking in axons by pTIRF microscopy,
Methods in Molecular Biology, 1298, 319-329 (2015) [Link].

47. Ong Q, Guo S, Zhang K, and Cui B,
U0126 protects cells against oxidative stress independent of its function as a MEK inhibitor,
ACS Chemical Neuroscience, 6, 130-137 (2015) [Link].

46. Zhang K, and Cui B,
Optogenetic control of intracellular signaling pathways,
Trends in Biotechnology, 33, 92-100 (2015). [Link]

2014


45. Xie X, Zhao W, Lee HR, Liu C, Ye M, Xie W, Cui B, Criddle CS, Cui Y,
Enhancing the nanomaterial bio-interface by addition of mesoscale secondary features: crinkling of carbon nanotube films to create subcellular ridges,
ACS NANO, 8, 11958-11965 (2014) [Link]

44. Zhang K, and Cui B,
Lighting up FGFR Signaling,
Chemistry & Biology , 21, 806-808 (2014). [Link]

43. Burridge PW, Matsa E, Shukla P, Lin ZL, Churko JM, Ebert AD, Lan F, Diecke S, Huber B, Mordwinkin NM, Plews JR, Abilez OJ, Cui B, Gold JD, Wu JC,
Chemically defined generation of human cardiomyocytes,
Nature Methods , 11, 855-860 (2014). [Link]

42. Zhang K, Duan L, Ong Q, Lin Z, Verman PM, Sung K, Cui B,
Light-mediated kinetic control reveals the temporal effect of the Raf/MEK/ERK pathway in PC12 cell neurite outgrowth,
PLOS ONE, 9, e92917 (2014). [Link]

41. Lin ZL, Xie C, Osakada Y, Cui Y, Cui B,
Iridium Oxide Nanotube Electrodes for Intracellular Measurement of Action Potentials,
Nature Communications, 5, 3206 (2014). [Link]

40. Osakada Y, Pratx G, Sun C, Sakamoto M, Ahmad M, Volotskova O, Ong Q, Teranishi T, Harada Y, Xing L, Cui B,
Hard X-ray-induced optical luminescence via biomolecule-directed metal clusters,
Chem. Commun, 50, 3549-3551 (2014). [Link]

39. Lin ZL, Cui B*,
Nanowire transistors: Room for manoeuvre.,
Nature Nanotechnology, 9, 94 (2014). [Link]

2013


38. Zhang K, Kenan R, Osakada Y, Xu W, Sinit R, Chen L, Zhao XB, Chen JY, Cui B, Wu C,
Defective axonal transport of Rab7 GTPase results in dysregulated trophic signaling,
J. Neuroscience., 33, 7451-7462 (2013). [Link]

37. Osakada Y*, Pratx G, Hanson L, Solomon PE, Xing L, Cui B,
X-ray excitable luminescent polymer dots doped with an iridium(III) complex,
Chem. Commun., 49, 4319 (2013). [Link]

2012


36. Hanson L, Lin ZL, Xie C, Cui Y, Cui B,
Characterization of the Cell-Nanopillar Interface by Transmission Electron Microscopy,
Nano Letters, 12, 5815-5820 (2012). [Link]

35. Xie C‡, Lin ZL‡, Hanson L, Cui Y, Cui B,
Intracellular recording of action potentials by nanopillar electroporation,
Nature Nanotechnology, 7, 185-190 (2012). [Link] [Highlights in Nature Nanotechnology] [Research Highlights in Nature Methods] [News and Views]

34. Xie W, Zhang K, Cui B,
Functional characterization and axonal transport of quantum dot labeled BDNF,
Integrative Biology, 4 , 953-960 (2012). [Link]

33. Osakada Y, Hanson L, Cui B,
Diarylethene doped biocompatible polymer dots for fluorescence switching,
Chem. Commun., 48, 3285-3287 (2012). [Link] (Cover article)

32. Chowdary PD, Che DL, Cui B,
Neurotrophin signaling via long-distance axonal transport,
Annu. Rev. Phys. Chem., 63, 25.1-25.24 (2012). [Link]

2011


31. Xie C, Hanson L, Cui Y, Cui B,
Vertical nanopillars for highly-localized fluorescence imaging,
Proc. Natl. Acad. Sci. USA, 108, 3894-3899 (2011). [Link] [Highlights in PNAS ][Hightlights in Nature Methods] [News report in Nanowerk] [ News report in Photonics] [Stanford News]

30. Osakada Y, Cui B,
Real-time visualization of axonal transport in neurons,
Methods Mol Biol. 670, 231-243 (2011). [Link]

29. Hanson L, Cui LF, Xie C, Cui B,
A microfluidic positioning chamber for long-term live-cell imaging,
Microscopy Research and Technique, 74, 496-501 (2011). [Link]

28. Zhang K, Osakada Y, Xie W, Cui B,
Automated image analysis for tracking cargo transport in axons,
Microscopy Research and Technique, 74, 605-613 (2011). [Link]

2010


27. Vossel KA, Zhang K, Brodbeck J, Daub AC, Sharma P, Finkbeiner S, Cui B, Mucke L,
Tau reduction prevents A-beta-induced defects in axonal transport,
Science, 330, p198 (2010). [Link] [Report on Science Daily] [News on Alzheimer's forum]

26. Xie C, Hanson H, Xie W, Lin Z, Cui B, Cui Y,
Noninvasive neuron pinning with nanopillar arrays,
Nano Letters, 10, 4020-4024 (2010). [Link] [News report in Nanowerk]

25. Zhang K, Osakada Y, Vrljic M, Chen L, Mudrakola H, Cui B,
Single-molecule imaging of NGF axonal transport in microfluidic devices,
Lab on a Chip, 10, 2566-2573 (2010). [Link]

24. Mudrokula H‡, Zhang K‡, Cui B,
Optically resolving individual microtubules in live axons,
Structure, 17, 1433-1441 (2009). [Link]

‡:equal contribution


Prof. Cui's Previous Work


23. Lin B, Cui B, Xu X, Zangi R, Diamant H, Rice SA,
Divergence of the long-wavelength collective diffusion coefficient in quasi-one- and quansi-two-dimensional colloidal suspensions.
Phy. Rev. E, 89, 022303 (2014). [Link]

22. Xu, X., Lin, B., Cui, B., Dinner, A. R. & Rice, S. A.
Spreading of colloid clusters in a quasi-one-dimensional channel.
J. Chem. Phys., 132, 084902 (2010). [Link]

21. Lin BH, Valley D, Meron M, Cui BX, Ho HM, Rice SA,
The Quasi-One-Dimensional Colloid Fluid Revisited,
J. Phys. Chem. B, 113, 13742-13751 (2009). [Link]

20. Wu C, Cui B, He L, Chen L, Mobley WC,
The coming age of axonal neurotrophin signaling endosomes,
J. Proteomics 72, 46-55 (2009). [Link]

19. Stratton TR, Novikov, S, Qato R, Villarreal S, Cui B, Rice SA, Lin B,
Structure of quasi-one-dimensional ribbon colloid suspensions,
Phy. Rev. E, 79, 031406 (2009). [Link]

18. Valley DT, Rice SA, Cui B, Ho HM, Diamant H, Lin BH,
Pair diffusion in quasi-one- and quasi-two-dimensional binary colloid suspensions.
J. Chem. Phys. 126, 134908 (2007). [Link]

17. Liu J, Ding J, Wu C, Cui B, Bhagavathla P, Chu S, Mobley WC, Fuchs E & Yang Y,
Retrolinkin, a novel membrane protein, plays an important role in retrograde axonal transport.
Proc. Natl. Acad. Sci. USA, 104, 2223-2228 (2007). [Link]

16. Wu C, Ramirez A, Cui B, Ding J, Liu J, Delcroix JD, Valletta JS, Yang Y, Chu S & Mobley WC,
Retrograde trafficking of nerve growth factor (NGF) signaling endosomes: Evidence for the requirement of a functional dynein-microtubule network.
Traffic. 11, 1503-1520 (2007). [Link]

15. Cui B, Wu C, Chen L, Ramirez A, Mobley WC & Chu S,
One at a time: tracking NGF retrograde transport in live neurons.
Proc. Natl. Acad. Sci. USA, 104 , 13666-13671 (2007). [Link]

14. Ding J, Allen E, Wang W, Valle A, Wu C, Nardine T, Cui B, Yi J, Taylor A, Jeon NL, Chu S, Vogel H, Tolwani R, Mobley W & Yang Y,
Gene targeting of GAN in mouse causes a toxic accumulation of microtubule-associated protein 8 and impaired retrograde axonal transport.
Hum. Mol. Genet. 15, 1451-1463 (2006). [Link]

13. Diamant H, Cui B, Lin B & Rice SA.
Correlated particle dynamics in concentrated quasi-two-dimensional suspensions.
J. Phys: Cond. Matter. 17, 4047-4058 (2005). [Link]

12. Cui B, Lin B, Frydel D & Rice SA.
Anomalous behavior of the depletion potential in quasi-two-dimensional binary mixtures.
Phys. Rev. E. 92, 258301 (2005). [Link]

11. Lin B, Meron M, Cui B, Rice SA & Diamant H.
From random walk to single-file diffusion.
Phys. Rev. Letters. 94, 216001 (2005). [Link]

10. Diamant H, Cui B, Lin B & Rice SA.
Hydrodynamic interaction in quasi-two-dimensional suspensions.
J. Phys: Cond. Matter. 17, 2787-2793 (2005). [Link]

9. Ho HM, Cui B, Repel S, Lin B & Rice SA.
Influence of a depletion interaction on dynamical heterogeneity in a quasi-two-dimensional colloid liquid. 
J. Chem. Phys. 121, 8627-8634 (2004). [Link]

8. Cui B, Diamant H, Lin B & Rice SA.
Anomalous hydrodynamic couplings in a quasi-two-dimensional suspension. 
Phys. Rev. Letters. 92, 258301 (2004). [Link]

7. Cui B, Shen MY & Freed KF.
Folding and misfolding of the Papillomavirus E6 interacting peptide E6ap. 
Proc. Natl. Acad. Sci. USA 100, 7087-7092 (2003). [Link]

6. Cui B, Lin B & Rice SA,
Structure and phase transitions in confined binary colloid mixtures. 
J. Chem. Phys. 119, 2386-2398 (2003). [Link]

5. Cui B, Diamant H & Lin B.
Screened hydrodynamic interaction in a narrow channel.
Phys. Rev. Letters. 89, 188302-188305 (2002). [Link]

4. Cui B, Lin B, Sharma S & Rice SA.
Equilibrium structure and effective pair interaction in a quasi-one-dimensional colloid liquid.
J. Chem . Phys. 116, 3119-3127 (2002). [Link]

3. Lin B, Cui B, Hwan J & Yu J.
Hydrodynamic coupling in diffusion of quasi-one-dimensional Brownian particles.
Europhys. Letters. 57, 724-730 (2002). [Link]

2. Cui B, Lin B & Rice SA.
Dynamical heterogeneity in dense quasi-two-dimensional colloidal liquid.
J. Chem. Phys. 114, 9142-9155 (2001). [Link]

1. Zhang G, Ma J, Cui B, Luo X & Ma D.
Compatibilizing effect of transesterification copolymers on bisphenol-A polycarbonated/poly(ethylene terephthalate) blends.
Macromolecular Chem. Phys. 202, 604-613 (2001). [Link]